Pilli, Toivo (2016). Varane anabaptism ja jüngerlus. Mõtteid tänapäevaks. Kirik ja Teoloogia, 227, 1−4.
Pilli, Toivo (2016). On the Edge: Baptists and Other Free Church Evangelicals in Tsarist Russia, 1855-1917 by Albert Wardin. Book review. In: Journal of European Baptist Studies (51). IBTS Centre Amsterdam.
Pilli, Toivo (2015). Where Do We Go from Here? Some Challenges for European Baptistic Ecclesiology. Journal of European Baptist Studies, 2, 5−16.
Pilli, Toivo (2015). Discipleship in Early Anabaptist Tradition: Inspiration for Today. Baptistic Theologies, 7 (2), 44−56.
Pilli, Toivo (2015). Eesti vabakirikute jumalateenistused. Kaido Soom. Liturgika (236−250). Tartu: Tartu Ülikooli Kirjastus.
Pilli, Toivo (2014). Baptist Leaders and the Atheistic Powers: A Soviet-Estonian Case Study. In: Anthony R. Cross and John H.Y.Briggs (Ed.). Freedom and the Powers: Perspectives from Baptist History (146−161). Didcot: The Baptist Historical Society.
Pilli, Toivo (2014). The Upside-down Kingdom. In: Gregory C. Joel (Ed.). Baptist Preaching: A Global Anthology (173−182). Waco, USA: Baylor University Press.
Pilli, Toivo (2013). Adam Podin ja pan-evangeelne vaimulaad. Usuteaduslik Ajakiri, 2, 62−87.
Pilli, Toivo (2013). Adam Podin: An Estonian Baptist with International Links and Pan-Evangelical Vision. In: Pieter J. Lalleman, Peter J. Morden, Anthony R. Cross (Ed.). Grounded in Grace: Essays to Honour Ian M. Randall (103−117). London: Spurgenon's College and Baptist Historical Society.
Pilli, Toivo (2011). Re-Evaluating Baptist Mission in the Baltics. In: John H. Y. Briggs and Anthony R. Cross (Ed.). Baptists and the World: Renewing the Vision (120−132). Oxford: Regent Park College, Oxford, and the Baptist Historical Society. (Centre for Baptist History and Heritage Studies; 8).
Pilli, Toivo (2010). Research in Baptist History in Eastern Europe: Why? American Baptist Quarterly, XXIX (4), 229−244.
Pilli, Toivo (2010). Hillar Palias - ohvitseri auastmes pastor. Usuteaduslik Ajakiri, 2, 77−97.
Pilli, Toivo (2010). Christians Under Surveillance During Communism. TransMission, 14−16.
Altnurme, R.; Rohtmets, P.; Vihuri, V.; Sõtšov, A.; Pilli, T.; Kurg, I.; Kaldur, P.; Altnurme, L.; Saard, R.; Aan, H.; Tiitus, M.; Soom, K.; Kilemit, L.; Jürjo, S.; Remmel, A.; Paas, M.; Vilumaa, H. (2009). History of Estonian Ecumenism. Tartu-Tallinn: University of Tartu / Estonian Council of Churches.
Pilli, Toivo (2009). Armas wend ja Andres Tetermann: eesti varase baptismi ajakirjanduslik katsetus. Ain Riistan, Andres Saumets (Toim.). Et sinu usk otsa ei lõpeks - pühendusteos Peeter Roosimaale (100−114). Tartu: Tartu Ülikooli usuteaduskond ja Kõrgem Usuteaduslik Seminar.
Briggs, John (General Editor); Eidberg, Peder; Jones, Keith G.; Pilli, Toivo et al (Associate Editors) (2009). A Dictionary of European Baptist Life and Thought. Milton Keynes, Colorado Springs: Paternoster.
Pilli, Toivo (2009). Estonia - Baptist History, and Estonian Baptist Theological Seminary. In: John H.Y. Briggs (Ed.). A Dictionary of European Baptist Life and Thought (169−172). Milton Keynes, Colorado Springs: Paternoster. (Studies in Bpatist History and Thought; 33).
Pilli, Toivo (2009). Preaching. In: John H.Y. Briggs (Ed.). A Dictionary of European Baptist Life and Thought (400−401). Milton Keynes, Colorado Springs: Paternoster. (Studies in Baptist History and Thought; 33).
Pilli, Toivo (2009). Piety. In: John H.Y. Briggs (general editor) (Ed.). A Dictionary of European Baptist Life and Thought (390−391). Milton Keynes, Colorado Springs: Paternoster. (Studies in Baptist History and Thought).
Pilli, Toivo (2009). Lutherans/Lutheranism. In: John H.Y. Briggs (general editior) (Ed.). A Dictionary of European Baptist Life and Thought (311−312). Milton Keynes, Colorado Springs: Paternoster. (Studies in Baptist History and Thought; 33).